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Toru Kariu, Kavita Sharma, Preeti Singh, Alexis A. Smith, Brian Backstedt, Ozlem Buyuktanir, Utpal Pal, BB0323 and Novel Virulence Determinant BB0238: Borrelia burgdorferi Proteins That Interact With and Stabilize Each Other and Are Critical for Infectivity, The Journal of Infectious Diseases, Volume 211, Issue 3, 1 February 2015, Pages 462–471, https://doi.org/10.1093/infdis/jiu460
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Abstract
We have shown that Borrelia burgdorferi gene product BB0323 is essential for cell fission and pathogen persistence in vivo. Here we describe characterization of a conserved hypothetical protein annotated as BB0238, which specifically interacts with the N-terminal region of BB0323. We show that BB0238 is a subsurface protein, and similar to BB0323, exists in the periplasm and as a membrane-bound protein. Deletion of bb0238 in infectious B. burgdorferi did not affect microbial growth in vitro or survival in ticks, but the mutant was unable to persist in mice or transmit from ticks—defects that are restored on genetic complementation. Remarkably, BB0238 and BB0323 contribute to mutual posttranslational stability, because deletion of one causes dramatic reduction in the protein level of the other partner. Interference with the function of BB0238 or BB0323 and their interaction may provide novel strategies to combat B. burgdorferi infection.
Lyme borreliosis is a prevalent vector-borne disease [1–3] caused by Borrelia burgdorferi sensu lato [4, 5], which persists in a complex life cycle involving Ixodes scapularis ticks and vertebrate hosts [6–8]. The microbe is transmitted to the mammalian dermis via tick bite and disseminates to a variety of internal organs, causing an array of clinical complications that range from arthritis and carditis to neurological disorders [9, 10]. Antibiotic treatment usually cures the infection, although some patients display chronic disease, which may be unrelated to persistent infection [11]. A vaccine to prevent Lyme disease in humans is unavailable [12].
Spirochetes are unique among bacteria; for example, in addition to a peptidoglycan layer, flagella also help determine the cell shape [13]. B. burgdorferi possess periplasmic flagella attached at either end of the cell running between the outer membrane (OM) and protoplasmic cylinder (PC), which is surrounded by an inner membrane and peptidoglycan layer [14]. Given that spirochetes possess periplasmic flagella that actively rotate, how the OM connects to the PC and maintains its stability remains puzzling [15]. In addition, limited information is available about OM biogenesis in B. burgdorferi, especially how this structure is stabilized and tethered to the PC. In most gram-negative bacteria, a family of proteins spanning the periplasmic space, called the Tol-Pal complex, is responsible for OM-PC interaction supporting membrane stability and cell fission [16–19].
Although the B. burgdorferi genome lacks identifiable orthologs of Tol-Pal complex members, earlier studies showed that a membrane protein, BB0323, supports OM stability, cell fission, and infection [20, 21]. Notably, BB0323 undergoes proteolytic processing, initially by a broad-spectrum borrelial protease, BB0104 (BbHtrA) [15, 22–24], and later by another C-terminal protease, CtpA [25], ultimately yielding distinct N- and C-terminal polypeptides [15]. Such multistep posttranslational maturation of BB0323, particularly involving multiple proteases, is intriguing and possibly relevant to the tight quality control of proteins, such as BB0323, that are critical for OM stability, fission, and virulence. Incidentally, our previous findings suggesting that BbHtrA is a BB0323 processing enzyme also indicated the possible existence of additional BB0323-interacting borrelial proteins, including BB0238 [15]. In this report, we characterize BB0323–BB0238 interaction and show that the proteins stabilize each other and support infectivity. A better understanding of the biological significance of the BB0323–BB0238 complex may shed new light on spirochete biology and infection and help in the development of possible therapeutic strategies to combat Lyme disease.
MATERIALS AND METHODS
B. burgdorferi, Mice, and Ticks
B. burgdorferi infectious isolate B31-A3 [26] was grown in Barbour–Stoenner–Kelly-H (BSK-H) medium containing 6% rabbit serum at 34°C. Generation of bb0323 mutants (bb0323−), complemented isolates (bb0323 com), and C-terminal BB0323-truncation mutants (bb0323ΔC and ΔLysM) was described elsewhere [15, 21]. The I. scapularis ticks were reared in the laboratory, as described elsewhere [21]. C3H/HeN mice 4–6 weeks old were purchased from the National Institutes of Health. Animal experiments were performed in accordance with the guidelines of the Institutional Animal Care and Use Committee and Institutional Biosafety Committee of the University of Maryland, College Park.
Coimmunoprecipitation, 2-Dimensional Sodium Dodecyl Sulfate–Polyacrylamide Gel Electrophoresis, and Liquid Chromatography–Tandem Mass Spectrometry
About 1010 spirochete cells were lysed with BugBuster Reagent (Novagen) and protease inhibitor (Sigma), incubated initially with BB0323 antiserum for 4 hours and later with Protein G(Sigma-Aldrich) beads overnight at 4°C. The beads were then centrifuged and washed, and bound proteins were eluted in a buffer (7 mol/L urea, 2 mol/L thiourea, 20 mmol/L dithiothreitol, 0.5% immobilized pH gradient buffer [GE Healthcare] containing 0.5% Triton X-100), resolved using 2-dimensional electrophoresis, and stained with SYPRO Ruby (Invitrogen). Samples for liquid chromatography–tandem mass spectrometry analysis were prepared by tryptic in-gel digestion of excised protein bands, as described elsewhere [27].
Generation of Recombinant Proteins and Antiserum
The bb0238 gene was cloned into pGEX-6P-1 (Amersham Pharmacia Biotech) by using specific primers shown in Supplementary Data, and the recombinant protein without the N-terminal leader sequence was produced in Escherichia coli. Expression and purification of the with glutathione S-transferase (GST)–fused proteins, with or without the tag, were performed as described elsewhere [15]. To generate polyclonal antiserum, the proteins (without the GST tag) produced in E. coli were emulsified in complete Freund adjuvant and injected into groups of 5 mice (10 µg/animal). The animals were boosted twice at 3-week intervals with the same dose of antigen in incomplete Freund adjuvant, and the serum samples were collected 2 weeks after the second boost. Assessment of the titer and specificity of the antiserum were performed as described elsewhere [15].
Western Blotting and Far-Western Blotting
These assays were performed using standard procedures, as detailed elsewhere [15, 28]. Antibody incubations were performed at room temperature for 1 hour using the following dilutions: anti-BB0238 (1:3000), anti-BB0323 N-terminal (1:3000), anti-BB0238 C-terminal (1:10 000), anti-FlaB (1:2000), anti-OspA (1:500), and anti-GST (1:5000) antibodies and horseradish peroxidase–conjugated secondary antibodies (1:5000–10 000). For far-Western analyses, proteins (0.5 µg per lane) were fractionated by 12% sodium dodecyl sulfate–polyacrylamide gel electrophoresis, transferred to nitrocellulose membranes, and blocked in Tris-buffered saline pH 7.5 with 0.05% Tween 20 (TBST) and 2% skim milk at room temperature for 1 hour. Membranes were incubated overnight at 4°C with GST-fused proteins (2 µg/mL) in blocking buffer and washed with TBST, and bound proteins were identified by immunoblotting using anti-GST and horseradish peroxidase–conjugated secondary antibodies, as noted above. Protein signals were visualized using chemiluminescence Western Blotting Detection Reagent (GE Healthcare).
Proteinase K Accessibility Assay, Isolation of OM, and Triton X-114 Phase Partitioning Assay
The proteinase K digestion assay was performed as described elsewhere [21, 28]. Briefly, 108 spirochetes were incubated in phosphate-buffered saline (PBS) in the absence or presence of proteinase K (Sigma) at a concentration of 200 µg/mL for 20 minutes, treated with phenylmethylsulfonyl fluoride (Sigma), centrifuged, and resuspended in PBS for subsequent immunoblot analysis using antibodies against BB0238, FlaB, or OspA. The OM vesicles and PC were extracted from spirochetes using sucrose density gradient centrifugation, as detailed elsewhere [27], and subjected to immunoblotting using BB0238 or OspA antibodies. The preparation of periplasmic and spheroplasmic proteins is described elsewhere [15]. Triton X-114 phase partitioning assays were performed as described elsewhere [28]. Briefly, spirochetes were resuspended in 800 µL of PBS (pH 7.4), sonicated, and extracted with 2% (final concentration) Triton X-114. After separation by centrifugation, the aqueous and detergent phases were washed with ice-cold acetone to precipitate the proteins, centrifuged at 13 000g for 15 minutes at 4°C [28], and finally immunoblotted using OspA, BB0323, and BB0238 antibodies.
Yeast 2-Hybrid Assay
A yeast 2-hybrid assay was performed using a commercially available kit (Matchmaker Gold Yeast Two-Hybrid System; Clontech Laboratories). Briefly, open reading frames representing bb0323 and bb0238 were amplified with polymerase chain reaction (PCR) using B. burgdorferi DNA and cloned into bait (pGBKT7) or prey (pGADT7) vectors using the primers indicated in Supplementary Data, and protein expression was confirmed using antibodies. Protein–protein interaction in yeasts was evaluated by growth in selective media and an X-α-galactosidase filter assay, as detailed in the manufacturer's protocol.
PCR Analysis
The primers used in PCR and quantitative reverse-transcription PCR (qRT-PCR) are shown in Supplementary Data. For qRT-PCR, RNA was isolated using TRIzol reagent (Invitrogen), treated with DNase I (NEB), reverse transcribed to complementary DNA (AffinityScript), and analyzed by qRT-PCR using iQ SYBR Green Supermix (Bio-Rad) as described elsewhere [29]. For assessment of bb0238 expression in hosts, mice (3 animals per group) were infected with spirochetes (105 cells per mouse), and tissues were collected at 2 weeks and pooled by type. To assess transcript levels in infected arthropods, uninfected nymphs that parasitized infected mice, unfed infected nymphs, and fed infected nymphs that engorged on naive mice were collected as detailed elsewhere [29]. For quantitative analysis of gene expression, the target transcripts were normalized to the number of flaB transcripts. For quantitative measurement of B. burgdorferi burden in infected tissues or ticks, flaB transcripts were normalized to mouse or tick β-actin levels.
Generation and Characterization of bb0238-Mutant and Complemented Isolates of B. burgdorferi
BB0238-deficient B. burgdorferi was generated via homologous recombination by replacing the entire bb0238 open reading frame with an antibiotic cassette, flaB promoter-fused kanamycin (flaB-Kan), as detailed elsewhere [21, 28, 29]. A bb0238-deletion clone retaining the same set of plasmids as the wild-type isolate was used for further experiments. Genetic complementation of bb0238 mutant was achieved by reinsertion of a wild-type copy of the bb0238 gene in the B. burgdorferi chromosome, as described elsewhere [21, 28, 29]. Spirochetes were also processed for transmission electron microscopy and growth analysis as described elsewhere [21].
Phenotypic Analysis of Genetically Manipulated B. burgdorferi
Spirochete burdens in mice and ticks were assessed using qRT-PCR analysis of flaB transcripts and normalized against murine or tick β-actin levels, as described elsewhere [21, 29]. Groups of mice (3 animals per group) were injected with the mutant or wild-type spirochetes (105 cells per mouse) through needle inoculation intradermally in the lower right quadrant of the abdomen upstream from the joint. Skin, heart, joint, and bladder samples were isolated 2 weeks after infection. The B. burgdorferi levels in individual mouse tissues were assessed by qRT-PCR analysis, as described above. Portions of ear and heart tissues were also cultured in BSK-H medium and analyzed at weekly intervals for ≥3 weeks using a dark field microscope.
For assessment of infection in ticks, nymphs were infected with wild-type or mutant B. burgdorferi via a microinjection procedure [21, 30]. Infected ticks were either fed on naive mice (5 ticks per mouse) within 24 hours or kept in the incubator for 14 days, and the borrelial burdens in unfed ticks were analyzed with qRT-PCR. To assess spirochete transmission from ticks to mice, infected nymphs were allowed to feed to repletion. The engorged ticks were collected as postfed nymphs and subjected to qRT-PCR analysis to determine borrelial burden. At day 14 after the tick feeding, mice were killed, and various tissues were collected and subjected to qRT-PCR analysis for determination of pathogen levels.
Protein Turnover Assay
Stability of BB0323 was analyzed by a turnover assay, as described for another borrelial protein [31]. Briefly, wild-type and bb0238-mutant cultures were incubated in BSK-H medium containing spectinomycin (100 µg/mL) at 34°C for 24 hours. Spirochetes were removed after 4, 8, and 24 hours and processed for Western blotting using anti-BB0323.
Statistical Analysis
Results are expressed as means and standard errors of the mean. The significance of the difference between the mean values of the groups was evaluated with the 2-tailed Student t test.
RESULTS
BB0238 Specifically Interacts With N-terminal Region of BB0323
Localization and Expression of BB0238
We next assessed bb0238 expression in vivo; transcripts were measured in various tissues of mice at 2 weeks of infection and in naïve nymphal ticks that acquired spirochetes from the infected mice. To enable examination of gene expression during borrelial persistence after intermolt stages in ticks and subsequent transmission, a fraction of these fed infected nymphal were allowed to molt and analyzed as unfed nymphs or as fed nymphs after engorgement on naive mice, respectively. Assessment of bb0238 transcript levels by qRT-PCR analysis indicated that the gene is constitutively expressed in all mouse tissues as well as in various stages of tick infection (Figure2E).
BB0238 Facilitates Infection and Transmission
BB0238 and BB0323 Stabilizes Each Other
To further assess protein turnover, we treated bb0238 mutant cells with an antibiotic that interrupts bacterial protein synthesis, spectinomycin, and the stability of BB0323 was monitored by Western blot analysis. Results show that while the levels of BB0323 in wild-type cells were unaffected 24 hours after antibiotic treatment, their levels in bb0238 mutants reflected a dramatic decrease by 24 hours, suggesting that BB0323 is unstable in bb0238-mutant cells. In contrast, as in wild-type cells, the level of FlaB in bb0238 mutants remained unaltered for 24 hours (Figure5C).
Finally, in an independent coimmunoprecipitation study using BB0323 antibodies, a 27-kDa protein, which was identified by an liquid chromatography–mass spectrometric approach as BB0238, could readily be immunoprecipitated from wild-type B. burgdorferi (Supplementary DataB); however, the protein is absent in similar coimmunoprecipitation efforts using bb0323 mutants lacking C-terminal polypeptides (bb0323ΔC, Supplementary Data) and producing insignificant levels of BB0238 (Figure5A). Taken together, these results suggest that BB0238 and BB0323 in B. burgdorferi are essential for each other's optimal stability.
DISCUSSION
Although extensive research over the past few decades has enriched our understanding of the biology of Lyme disease pathogens [32], many questions remain, such as how the OM connects to the PC with the presence of rotating periplasmic flagellar bundles. Although B. burgdorferi lacks orthologs of Tol-Pal proteins [18, 33], which connect the OM to the cell body in most gram-negative bacteria, targeted deletion of one of the borrelial genes, bb0323, resulted in a phenotype that is strikingly similar to the effects of removing certain Tol-Pal proteins [33, 34]. However, unlike the Tol-Pal proteins, BB0323 is processed into distinct N- and C-terminal polypeptides that support host infectivity in a manner that appears to be independent from an indispensable role in the fission process, as spirochetes carrying a C-terminal-truncated version of BB0323 display normal OM and fission yet remain noninfectious in mice [15]. Here we report identification of a novel periplasmic BB0323-interacting protein, BB0238, that is redundant for OM integrity and cell fission yet indispensable for host infectivity. Interaction of BB0238 and BB0323 seems critical for maintenance of posttranslational stability of both proteins. BB0238 might interact with additional proteins besides BB0323, which remains a subject of future investigation.
The existence of BB0238 and BB0323 in the same subcellular compartment of B. burgdorferi, such as in the periplasm, and as membrane-bound forms, further supports their functional association, as indicated by several independent in vitro and in vivo assays. However, we do not know whether formation of such a complex is necessary for host infectivity or whether instability in the absence of either partner (in deletion mutants) is due to a lack of direct interaction. Although bacteria may use small-protein modifiers, such as Pup proteins [35], or classic chaperones to control protein stability [36], limited information is available on possible mechanisms of maintaining posttranslational stability of borrelial proteins. In many gram-negative pathogens, type III–secreted proteins, including translocators, often require interacting proteins, such as specific chaperones, for proper storage and efficient secretion [37–39]. Nevertheless, to the best of our knowledge, BB0323 and BB0238 are a unique example of interacting proteins in which posttranslational stability of both proteins is mutually dependent. Findings have suggested that protein–protein interactions influence protein stability, especially of folded forms [40]. Therefore, it is tempting to speculate that folded BB0323-BB0238 proteins interact in the periplasm or another subcellular compartment pertinent to their stability and function, supporting spirochete infection.
BB0238 is a 27-kDa conserved borrelial protein that harbors an N-terminal tetratricopeptide repeat (TPR) domain, which is known to mediate protein–protein interactions in a variety of biological systems [41]. Not only does BB0238 directly interact with BB0323, but both proteins also follow a similar pattern of expression in murine hosts and ticks. Notably, although BB0238 supports stability of BB0323, it is not absolutely necessary for the existence of the latter protein. In the absence of BB0238, spirochetes can still process BB0323 and maintain a low level of N- and C-terminal polypeptides. Remarkably, in bb0238 mutants, small amounts of N-terminal polypeptide are sufficient to support cell fission, but a low level of C-terminal polypeptide, similar to their absence in bb0323 C-terminal-truncation mutants (bb0323ΔC), was unable to sustain infectivity. This further strengthens our speculation that BB0323 is involved in multiple functions [15], where low levels of N-terminal polypeptide can support normal cell fission but an absence (or a decreased level) of C-terminal polypeptide renders spirochetes noninfectious in the murine host.
Why BB0238 plays a nonessential role in the BB0323-mediated cell fission process yet is required for spirochete infectivity remains enigmatic. Similarly, although BB0323 and BB0238 are required for membrane stability, it is also puzzling why their expression levels, which fall below that of FlaB, differ dramatically during various stages of growth and infectivity. We speculate that their stoichiometry or that of other functionally associated molecules, such as BbHtrA, which mediates processing of BB0323 [15], helps maintain a critically low level of BB0323 or processed polypeptides sufficient for fission, whereas a higher level is required for host infectivity. Nevertheless, our study underscores that inhibition of BB0238 and BB0323 interaction or their function may provide novel strategies to interfere with B. burgdorferi infection.
Notes
Acknowledgments. We thank Faith Kung for her assistance with this study. We also thank Philip Stewart and Patricia Rosa for the generous gift of a C-terminal BB0323 antibody.
Financial support. This work was supported by funding from the National Institute of Allergy and Infectious Diseases (award R01AI080615 to U. P).
Potential conflicts of interest. All authors: No potential conflicts of interest.
All authors have submitted the ICMJE Form for Disclosure of Potential Conflicts of Interest. Conflicts that the editors consider relevant to the content of the manuscript have been disclosed.
References
Author notes
Presented in part: Gordon Research Conferences–2014 (Spirochetes, Biology of), Ventura, California, 19–24 January 2014.
Present affiliations: Department of Nutritional Science, Shokei University, Kumamoto, Japan (T. K.); Department of Microbiology, Faculty of Veterinary Medicine, Ondokuz Mayis University, Samsun, Turkey (O. B.).